spamosaic.utils.get_umap

spamosaic.utils.get_umap(ad, use_reps=[])

Compute UMAP embeddings for specified representations and store them in .obsm.

Parameters:

• ad (AnnData) – Input object.

• use_reps (list of str, default=[]) – Keys in .obsm to compute UMAP for (e.g., ['X_pca']).

Returns:

The same object with additional .obsm[f'{rep}_umap'] for each rep.

Return type:

AnnData