Datasets
========

We provided the processed h5ad files used in all tutorials:

.. list-table:: 
   :header-rows: 1
   :widths: 5 25 10 20 15 25 20

   * - Index
     - Task
     - Source
     - Species
     - Tissue
     - Technology
     - Download
   * - 1
     - Horizontal integration
     - `Zhang et al. <https://www.nature.com/articles/s41586-023-05795-1>`_
     - Mouse
     - Brain (coronal)
     - Spatial ATAC-RNA seq
     - `Google drive <https://drive.google.com/drive/folders/1FM42Ibhrf5l6cjzORTFqEXLuxlT5ltJ2?usp=drive_link>`_
   * - 2
     - Horizontal integration
     - In-house data
     - Human
     - Tonsil
     - 10X Visium
     - `Google drive <https://drive.google.com/drive/folders/1O8HKz3Caf8DfMSFhjfta_qXt6LyjlfTm?usp=drive_link>`_
   * - 3
     - Vertical integration
     - `Zhang et al. <https://www.nature.com/articles/s41586-023-05795-1>`_
     - Mouse
     - Brain (coronal)
     - Spatial ATAC-RNA seq
     - `Google drive <https://drive.google.com/drive/folders/1bat-BGO3YAuC5GM9UNNyq4BcD6y6lJw2?usp=drive_link>`_
   * - 4
     - Vertical integration
     - In-house data
     - Human 
     - Tonsil
     - 10X Visium
     - `Google drive <https://drive.google.com/drive/folders/1cETcOv8dbX-4pXngIY1dPsm78vzLigmX?usp=drive_link>`_
   * - 5
     - Mosaic integration
     - Simulated data
     - Null
     - Null
     - Null
     - `Google drive <https://drive.google.com/drive/folders/1m04mgkxXBo2in5Cq9Dv9fymwtA5V72IY?usp=drive_link>`_
   * - 6
     - Mosaic integration
     - `Zhang et al. <https://www.nature.com/articles/s41586-023-05795-1>`_, `Deng et al. <https://www.science.org/doi/abs/10.1126/science.abg7216>`_ 
     - Mouse 
     - Brain (coronal)
     - Spatial CUT&Tag–RNA-seq, Spatial-CUT&Tag seq 
     - `Google drive <https://drive.google.com/drive/folders/10ySKpZXvl7ryC8GpSKyzovvC1pg2xVC2?usp=drive_link>`_
   * - 7
     - Mosaic integration
     - In-house data
     - Human
     - Tonsil
     - 10x Visium
     - `Google drive <https://drive.google.com/drive/folders/14dEmbw5FnVZG4Vvh02S561RnD0x0nvqk?usp=drive_link>`_
   * - 8
     - Imputation
     - `Zhang et al. <https://www.nature.com/articles/s41586-023-05795-1>`_
     - Mouse
     - Brain (coronal)
     - Spatial ATAC-RNA seq
     - `Google drive <https://drive.google.com/drive/folders/1GyOvHxweRYrq8Hiq5OdKhfSowUfcMoXY?usp=drive_link>`_
   * - 9
     - Imputation
     - In-house data
     - Human
     - Tonsil
     - 10X Visium
     - `Google drive <https://drive.google.com/drive/folders/1ZeZr0Y2LQPnclFSm7JVqE6hZerXb7RF5?usp=drive_link>`_