Datasets

We provided the processed h5ad files used in all tutorials:

Index	Task	Source	Species	Tissue	Technology	Download
1	Horizontal integration	Zhang et al.	Mouse	Brain (coronal)	Spatial ATAC-RNA seq	Google drive
2	Horizontal integration	In-house data	Human	Tonsil	10X Visium	Google drive
3	Vertical integration	Zhang et al.	Mouse	Brain (coronal)	Spatial ATAC-RNA seq	Google drive
4	Vertical integration	In-house data	Human	Tonsil	10X Visium	Google drive
5	Mosaic integration	Simulated data	Null	Null	Null	Google drive
6	Mosaic integration	Zhang et al., Deng et al.	Mouse	Brain (coronal)	Spatial CUT&Tag–RNA-seq, Spatial-CUT&Tag seq	Google drive
7	Mosaic integration	In-house data	Human	Tonsil	10x Visium	Google drive
8	Imputation	Zhang et al.	Mouse	Brain (coronal)	Spatial ATAC-RNA seq	Google drive
9	Imputation	In-house data	Human	Tonsil	10X Visium	Google drive