spamosaic.utils.get_umap

spamosaic.utils.get_umap(ad, use_reps=[])

Computes UMAP embeddings for given representation keys and stores them in .obsm.

Parameters:

• ad (AnnData) – Input data.

• use_reps (list[str]) – Keys in .obsm to compute UMAP for.

Returns:

Annotated object with new UMAPs.

Return type:

AnnData